Scaffold Ga0247044_1069415

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247044_1069415

Scaffold Ga0247044_1069415

Overview

Basic Information
Taxon OID	3300029896 Open in IMG/M
Scaffold ID	Ga0247044_1069415 Open in IMG/M
Source Dataset Name	Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DMAC, Technical University of Denmark
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	656
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location Name	Greenland: Tasiilaq
Coordinates	Lat. (^o)	65.38	Long. (^o)	-38.53	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101808	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247044_10694152	F101808	AGGAG	MLTGEQRATTAAMWLTRWQGCEASGVSMAEYARREGFDADAAYRWKRILARDGQIAASKGRSTKTAKRCVAAKFARVALSDAVAPATILLRLVLRNGRRAELEIGAVGDLGDVLSALERC

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