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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029902 Open in IMG/M |
| Scaffold ID | Ga0247058_1003860 Open in IMG/M |
| Source Dataset Name | Cryconite microbial communities from ice sheet in Thule, Greenland - THU-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DMAC, Technical University of Denmark |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8107 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Greenland: Thule | |||||||
| Coordinates | Lat. (o) | 76.23 | Long. (o) | -68.15 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045483 | Metagenome | 152 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247058_10038602 | F045483 | N/A | VTETWRQSTPTAKPRRLVSGLSVLGFSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTVHTQLEVFAFFSKTVTADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWTEGETTKYWTRISSDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |