NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311371_10171320

Scaffold Ga0311371_10171320


Overview

Basic Information
Taxon OID3300029951 Open in IMG/M
Scaffold IDGa0311371_10171320 Open in IMG/M
Source Dataset NameIII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3280
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050419Metagenome / Metatranscriptome145Y
F070201Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311371_101713202F070201GGAGMRTMPLQFLTWGTITAAVGSAVWLSSTDQAAVFCSVGYRATSSAMGIDTPLPAEPTRAGPSAKVPGSSAAKQFQANAS
Ga0311371_101713203F050419GGAGMTNASRPTFLRSFGRAAAARRAPDLADMGTAFALDEALEHGSCDSLIPGDSPPPVRTAVPVAPWRLWLGRKLGS

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