NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272449_1011168

Scaffold Ga0272449_1011168


Overview

Basic Information
Taxon OID3300029977 Open in IMG/M
Scaffold IDGa0272449_1011168 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6030
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5734Long. (o)-110.795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F080678Metagenome115N
F086364Metagenome111N
F088087Metagenome109N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0272449_101116811F100012GGAGGMDRERVLQAIREAQAEYNIKDLDNFIRTAWEEGDVLQAQFVAEMVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSADDAVDAVTRLAELIGQNLKSSVVV
Ga0272449_101116812F069506GGAGGMQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWNDPDFPNDIPEIVVRTVERLIGKTLAWYCELGRDPAGFTGEYSFIVVDPKTQKCLTFRQYTSDGINIHYFLSVTGTVVYYEDIIRLVNKLISYISPALNS
Ga0272449_101116813F086364AGGAGMEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVEALTDRNFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA
Ga0272449_10111687F088087AGGTGGMKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVQGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10111688F080678GGAGGMFVRKVDAKTTPIEEIYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKFGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFCKEVSAHADV
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