NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272449_1014543

Scaffold Ga0272449_1014543


Overview

Basic Information
Taxon OID3300029977 Open in IMG/M
Scaffold IDGa0272449_1014543 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5011
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5734Long. (o)-110.795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F080678Metagenome115N
F086364Metagenome111N
F088087Metagenome109N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0272449_10145434F086364AGGAGGMEREKIIAALETAFADISGAEYEDEPITFAEFLESFAKFRDLDFPVYWIPWTVEEAVEELTGRKFGWHEDALKDEWNYTGEFSFICVDPETLKCLTAERSDGSCTVSVVFPILRIDDAVQAVEYFLRLVQQA
Ga0272449_10145435F069506GGAGGMQLEQLTYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWNDPEFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVDYEGIVRLVTKLLNQIQSALADA
Ga0272449_10145436F100012AGGAGGMDREKVLQALREAQAEYNIEDLDRFIKQAWEEVNIIDAQIVAELTERAVEILLDQDFLWTHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFAKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVE
Ga0272449_10145438F080678GGAGGMFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGMSARKFKRKLQKFGVTWSYNKDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0272449_10145439F088087AGGTGGMKASDGSVWTPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIERFIAGGDE
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