NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268242_1000164

Scaffold Ga0268242_1000164


Overview

Basic Information
Taxon OID3300030513 Open in IMG/M
Scaffold IDGa0268242_1000164 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11722
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: San Luis Potosi
CoordinatesLat. (o)21.766Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0268242_10001643F091480GAGVSSGGRGEGAAFYSRRADGPYYRWVYAEGSMRWRFSRVPSSRLRRQVLCVAPWEAVPSALRDRLGEHYLE
Ga0268242_10001644F020517AGGLSGQKPVSRDARHYLVKRPNEILPKRLSWNQVQAELLEKGTAADESMLFRGIVTEDGTEYRDMYADSRTQVTEHTA
Ga0268242_10001646F081092AGGVSGYEDFIERLEAALADDEGREDFLEYLQGLTREGRAEIVAEADRLEAEAKVD
Ga0268242_10001648F079676GGAGMWNETSGPGAGIKAGDRVRALEGAYKDKVGTAVRVVTSRDEGRTSESVLVSFPAGGADYLDAGALEKTEAADD
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