NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311355_11673064

Scaffold Ga0311355_11673064


Overview

Basic Information
Taxon OID3300030580 Open in IMG/M
Scaffold IDGa0311355_11673064 Open in IMG/M
Source Dataset NameII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004467Metagenome / Metatranscriptome437Y
F055940Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0311355_116730641F055940N/ATIVAADEKWFAGRQITAHNSASTANPLLSPQGLTEVARMLADGTITARIRSTVTLDGAEQVLDKLRHGGLRGKAVIRL
Ga0311355_116730642F004467N/ARLRGREDRWGYERREGLIADQLITVATGIGEAHPGDTVVIAVGSSSTAMHRVVGSVAVNLARRAPVPIVVVP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.