Basic Information | |
---|---|
Taxon OID | 3300030714 Open in IMG/M |
Scaffold ID | Ga0307925_100388 Open in IMG/M |
Source Dataset Name | Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4814 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Finland: Risofladan, Vaasa | |||||||
Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031354 | Metagenome / Metatranscriptome | 182 | Y |
F059653 | Metagenome / Metatranscriptome | 133 | Y |
F091296 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307925_1003885 | F059653 | N/A | MNNKAALQSLTEYKNDNLLEKLLLDRGVVTGGTYAAANAKDIDLAAASLYFTLAAHPELKEGAFSIKYSGAQLIAMAKRILKKYDMDEPTVDGAAIW |
Ga0307925_1003886 | F091296 | GGAG | MVVERYPHTATINYYTPGTYNTIGIYTEGTLVTIGIVCNIQPNSTKYIIGESGDMIGYSWAVFSPVFAGARSVPKAAKLTFFSKEHIILQLFEYQKHVEMKC |
Ga0307925_1003888 | F031354 | AGGA | MKTTFDINDILYPVINTEEVQAILDGGRVYRNKKPLNSELQDIVIIPLSNYVGDEIINDATFMVNCYCKNFNNGAPNITKLRAIAKAVIDEIELYNSAPNYYVFGIVNQILLNDIDQKSMSYVNLRINCFIEK |
⦗Top⦘ |