Scaffold Ga0308127_1049892

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308127_1049892

Scaffold Ga0308127_1049892

Overview

Basic Information
Taxon OID	3300030715 Open in IMG/M
Scaffold ID	Ga0308127_1049892 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1295_SCM (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000787	Metagenome / Metatranscriptome	891	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308127_10498921	F000787	N/A	PTVIMKIFAIASLFAAVQAGSPPSVGLGHAYIPATREDYDNAKELWGGDWAKYRAAHPNDQDCGISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLAPDH

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