NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311366_11699060

Scaffold Ga0311366_11699060


Overview

Basic Information
Taxon OID3300030943 Open in IMG/M
Scaffold IDGa0311366_11699060 Open in IMG/M
Source Dataset NameIII_Fen_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009040Metagenome / Metatranscriptome324Y
F041929Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0311366_116990601F041929GGAVSKPGAGPSSGISSVDVLIPTERHPACRQREARSGSCTERENLAGDAKGK
Ga0311366_116990602F009040N/AMKEGPSGSAKPPQAAVVKSDGGERCGNVGAMISAGKIERGERKQTASEASKSD

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