Scaffold Ga0265760_10007638

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265760_10007638

Scaffold Ga0265760_10007638

Overview

Basic Information
Taxon OID	3300031090 Open in IMG/M
Scaffold ID	Ga0265760_10007638 Open in IMG/M
Source Dataset Name	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3089
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022512	Metagenome / Metatranscriptome	214	Y
F038796	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265760_100076382	F038796	GAG	MVDKITAQRDVEYFYELLAKETDENKRVILQRLLADAEKLRQSDDQEEKGDKNTKADQRNSKDD
Ga0265760_100076385	F038796	GAG	MVDKITAQRDVEYFYELLAKETDENKRVILQRMLADAEKLRQSDDQEEKGDKNTKADQRDSKDD
Ga0265760_100076388	F022512	GAG	MPPPVANNKQRIITIYVLIALGFAGLIGAHEVAGPDENADLTLPFILAAAGTACFVAAGLMARRLMKGGASR

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