NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307498_10215685

Scaffold Ga0307498_10215685


Overview

Basic Information
Taxon OID3300031170 Open in IMG/M
Scaffold IDGa0307498_10215685 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023920Metagenome208Y
F067977Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307498_102156851F023920AGGAMNEHCTPEANRNTFDGDAISRADREFLASLSDHPLVRHPLYSVPPPPRPNYDGCTTIDERAEAQRACFPAALDWMLVNYAYYTGAFIGKGGIISLVDGEICSIASLRGFMQPYTIVEEGPRGGLKKMSVVDTWITHPLRAQIDAVQTRPDRSRPTFTEDGLIVYN
Ga0307498_102156852F067977N/ACSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.