Basic Information | |
---|---|
Taxon OID | 3300031198 Open in IMG/M |
Scaffold ID | Ga0307500_10014260 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1654 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 45.6996 | Long. (o) | -121.669 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009106 | Metagenome / Metatranscriptome | 323 | Y |
F032749 | Metagenome | 179 | Y |
F042588 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307500_100142602 | F032749 | GGA | MTEAWGRLQVEVWDDEIVITLPFTDYTVTYYKSANSPGLLAKNFPKSDDERVPVSQAEFLARAWKLANDKARELGWIV |
Ga0307500_100142603 | F042588 | AGGA | MTNKTFRILLKAIAAFAITAALGSASFAGDFTVREGKRYCATLALSPVEQLADNALIARKFRALGFSSVRVSGTGAKRRVEGVWHRKDASTTLPRQIVAVAGL |
Ga0307500_100142604 | F009106 | N/A | DAFDRWKDALVDQNKQTTQAARHRAHARVTSMEDLIAETPADDIEGVGIKLALFVYMSGVHPETADSAVEQVLSAYKDCVRVVGRDLLAEVKGLMPANQQSV |
⦗Top⦘ |