NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10084552

Scaffold Ga0318516_10084552


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10084552 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001152Metagenome / Metatranscriptome764Y
F005460Metagenome / Metatranscriptome400Y
F100541Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100845521F005460AGGAVEVTVLPNGNYYLPATNEIIPADMATPSPDERFHHCIYYPVANEFDPSGYSAWSDTPET
Ga0318516_100845522F100541AGGAGGVQGDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKFGDTPRLASAERRESTQDG
Ga0318516_100845523F001152AGGAGGMRGEIINEYQKLNAENQKAFRRWLWANAVVGAILLTGLIAVALQGDESGAIAQNATMHTQAKLP
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