NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0318516_10088992

Scaffold Ga0318516_10088992


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10088992 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1731
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003971Metagenome / Metatranscriptome459Y
F005460Metagenome / Metatranscriptome400Y
F067071Metagenome126N
F085275Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100889921F085275N/ARGRWLRRASQFIRSTSLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALIE
Ga0318516_100889922F003971GAGGMNYLPSSLIIVALASQAMIWHSLSTIRDAIQQTNAIVLAACGSDERPCQVAAHPGQIELGEIMVRTRVSDGFSCGYSRYNPCWIKASGEDGLVGP
Ga0318516_100889923F005460GGAGGMPVEAIVLPDGNYYLPKTDEVIPADMATPSPDDRFHHCYYPMFAMANGFDPNGPVWERKLKTRCFFAPMNSS
Ga0318516_100889926F067071AGGMIYGPKTEAILAVALTVASGGWLILVLLGYLESLGWGHVLGLFALFGIGVASLLTGKRRTGPR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.