NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318538_10044832

Scaffold Ga0318538_10044832


Overview

Basic Information
Taxon OID3300031546 Open in IMG/M
Scaffold IDGa0318538_10044832 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2137
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000284Metagenome / Metatranscriptome1378Y
F000792Metagenome / Metatranscriptome890Y
F001673Metagenome / Metatranscriptome654Y
F075541Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0318538_100448323F001673GGCGGMASFVAVLLVLALGHRWSVTVSWFASDKTCRERHATPWFAQRLDIDCGRLLRARLWKLYDEGQFGRSRRGQGAVEYMKQLLEHPDE
Ga0318538_100448324F000792AGGMREHLLLFCLLGLVLAATIILMIAPGAVTWALALIE
Ga0318538_100448325F000284AGGAGGLKKLAATIALLCVSNSVPAHDMYSNLRDREGHLCCGGQDCKPVETVILPNGNYYLPATDEIIPADMATPSPDDRFHHCIYYPMAKDYEPWGYPVWESTPKTRCFFAPMNSS
Ga0318538_100448326F075541AGGLPNNRDLYVRALVPQTRFEWKAELGSAFNTAYTAQLGNVTYYVPSRDYGHPAYLE
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