NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318538_10499225

Scaffold Ga0318538_10499225


Overview

Basic Information
Taxon OID3300031546 Open in IMG/M
Scaffold IDGa0318538_10499225 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006088Metagenome / Metatranscriptome382Y
F013933Metagenome / Metatranscriptome267Y
F027350Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0318538_104992251F027350GAGMTTTGNNRIMIFGPKSDGTYVVEFRTAGGETLAISIPASEAAVVR
Ga0318538_104992252F013933GGAVTELERKHLVETDRHIAECKAYIAKQRELIERAIQQDRSTEVVETTLEALETSLGAFERQRQLLLDRLQERER
Ga0318538_104992253F006088N/ASSPRDCLRRADDAKQRAAQAKEPFYKSAYERVAEYSHD

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