NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318528_10069307

Scaffold Ga0318528_10069307


Overview

Basic Information
Taxon OID3300031561 Open in IMG/M
Scaffold IDGa0318528_10069307 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012739Metagenome277Y
F038032Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0318528_100693072F012739GGAGMRALIFAFAGALAVATSAQAAPFAPKPASIELGTTPPIELVRDGCGRGYHRTHWRDQWGNWQWGDCVPYEGRAYNGWGAGWYYSYPDWRAAPFRWGWGYQ
Ga0318528_100693074F038032AGGAGGMIVGRLFGKTGRGLAATAAILTAIGLTTVPRPADAGGG

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