NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247727_10000777

Scaffold Ga0247727_10000777


Overview

Basic Information
Taxon OID3300031576 Open in IMG/M
Scaffold IDGa0247727_10000777 Open in IMG/M
Source Dataset NameBiofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77942
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (80.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Virginia
CoordinatesLat. (o)38.1667Long. (o)-79.633Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002340Metagenome / Metatranscriptome569Y
F010551Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0247727_1000077751F002340AGGAGMKTIVSALIALSVIAGVATSASAFDAKTFYEQQDRAHN
Ga0247727_1000077752F002340AGGAGMKTIVSALLALSVIAGVAAPASALDAKTFFEQIDKSHY
Ga0247727_1000077753F002340AGGAGMKTIVAALLALSVIAGVATSASAFDAKTFYEQLDKNHY
Ga0247727_1000077772F010551GGAGMKRIALAVLAVAAFSAPAMAQNCAKDYKAFWDNLDRARYAKLSPEQFADLSRTTLRGYDACTAGDQRFTAESFFKKLDSEHFAKASDIFKSGAFAPPGAKK
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