NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318542_10355108

Scaffold Ga0318542_10355108


Overview

Basic Information
Taxon OID3300031668 Open in IMG/M
Scaffold IDGa0318542_10355108 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007009Metagenome / Metatranscriptome360Y
F060554Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0318542_103551081F060554N/ATVTCRVCVATRTVDEMKRDRVLGKMSAQEAFRRHLEQV
Ga0318542_103551082F007009GGAGMQARTAFRLAMLANGFQPLLNDCKRSIETGWPRRTVDEAEVLSWDRSALASTGMKLDGDLAVIDADVADASLVETLAGVLGKRFPTLFERGLVRHAGGPKEAWIARVDEPFRRLASRRWYRGGDPDDPAVPKHLVECFGSLGTRQFAVDGPHARNQAGEVIDEYRFAGGASPATTPRAALPVLPKAAYALACNLFDEIAEAAGLAAVSESSR
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