Basic Information | |
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Taxon OID | 3300031687 Open in IMG/M |
Scaffold ID | Ga0308008_1001578 Open in IMG/M |
Source Dataset Name | Marine microbial communities from water near the shore, Antarctic Ocean - #125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7540 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Ocean | |||||||
Coordinates | Lat. (o) | -68.5596 | Long. (o) | 77.8957 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016619 | Metagenome / Metatranscriptome | 246 | Y |
F039114 | Metagenome / Metatranscriptome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308008_100157811 | F016619 | N/A | MAITIIQNANHKSLTGKTLSIQSELTSKLKSVVVDITYAVGDNYATGGNVVDVSLGSRIRTVIGAEILDGNKGLLLQYIPSATNAASTGKIKCYGEDHTAKGSAARAFAELANASTAVNSMTCKIRVLGF |
Ga0308008_10015783 | F039114 | AGG | MAEKFEVKTGGTKIGDKIVDIHQKNEYTRVNNYKEGMCFGCFGNGIPVGAGVSDICGDCAGKKGRETILVPIKEIVYGLCHFCGEFKHGLEQINARLCQKCHRRVSNHMKSYNLKGGMLETDPFWKSQRRKHGKDWAHIMSKDLGNPR |
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