NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318496_10141991

Scaffold Ga0318496_10141991


Overview

Basic Information
Taxon OID3300031713 Open in IMG/M
Scaffold IDGa0318496_10141991 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002801Metagenome / Metatranscriptome529Y
F033785Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0318496_101419911F033785N/AMSSLVLKRAWASRSSGEWNDGDFDVLADGTIVGRIMKAAAVPVGMSW
Ga0318496_101419912F002801AGGAGVALSRLKELGEEAVVALAASLARGGPVVKGQLIASRFYEAMQRELKRLPMHDPKRAALIAASDRCERIAAARINPSDLLDELRRALAVLSDDHPSEPPPRGRPVLRVIEGGLSKV

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