NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306918_10124216

Scaffold Ga0306918_10124216


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10124216 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1875
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014650Metagenome / Metatranscriptome261Y
F063504Metagenome / Metatranscriptome129Y
F073745Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0306918_101242161F014650N/ADRVQECCAGLLGAVLVVLMAQRGHPDQVEVAVSTLMNHLHCYILALAAERVSRDTEIWLEPPTLANLFDEEREVQARRHAAEES
Ga0306918_101242163F073745GAGGMSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPVPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306918_101242164F063504AGGAGMTEQNQAQDLLATLRDALQQLGFNLELTRSGVDGVASQAERIRDSVAALCDLWQREDTS
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