NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10027298

Scaffold Ga0315331_10027298


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10027298 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4226
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F009070Metagenome323Y
F015102Metagenome / Metatranscriptome257Y
F103094Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1002729810F103094AGGAGMKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGWEDDRAVTVSH
Ga0315331_1002729811F005813GAGGMKLYKNSNGVWAGTQADARKYCGKDYTTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALEMSRKEKTDEE
Ga0315331_100272982F009070AGGAGMRLAVVIDVDGDIMYVPEGKVFPNFPKPKVFYNLKDAEEERAKWNTGIIVDLDDNNKTVPVIRSFDDEERRRAMEREEMNRDDGTSTSKDVTQ
Ga0315331_100272985F015102GGAMESEDGKNPNTPFDDATHWVGNLPRKDTDSTKRSTKRSSWWQTQSDILRKKLGMETKRKD
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