NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308418_1019585

Scaffold Ga0308418_1019585


Overview

Basic Information
Taxon OID3300031783 Open in IMG/M
Scaffold IDGa0308418_1019585 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2067
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005302Metagenome / Metatranscriptome405Y
F056643Metagenome / Metatranscriptome137N
F081390Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308418_10195851F056643N/AGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSV
Ga0308418_10195852F005302AGGAGGMSHSGVIAGLYAGNFAVEISTNNTTWTAVSNATVKIDDVELNRPSGEAFVGGSSDYATITIGKREPVEITLTFLYNEATNSATNTIFDQFQSTTPRLGVRWSPRGLVSQARAYATSNDGGATTGLGVITNVTLSTLDPSDPEPYVAMVTVRTPSLRQYALGTNPTDLA
Ga0308418_10195854F081390N/AMPPLCAQRREVLRDALQRQTVKRVGRAVVNVPTQH
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