NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10003195

Scaffold Ga0308411_10003195


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10003195 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10970
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F081390Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_1000319511F081390N/AMCSDYLLMPPFRAQRRKVLRDALQRQTVKRVGRAVVDVSAQH
Ga0308411_1000319512F004791AGGAGGMDKPAEIYDIDAIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLTPAVGNITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILGEPYAAAALLLKKIFDAVGDEGNG
Ga0308411_1000319513F005302AGGAGGMAHTGVIDGLFAGNFAVEISTNLTTWTAVSNATVKIDDVELNRPSGEAFVGGSSDYATITVGKREPVELTLTFLYNEATGSATNTIFDRFQSATPTLGVRWSPRGLVSQARAYATSNDGGSNTGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGNSPTDLS
Ga0308411_1000319514F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVRRLATQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVAQLRFAWLARGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPST
Ga0308411_100031952F016100AGGAGGMVVSVKIERFKEYSELMRVISRCESAPATNKDRIVPLNYELLIGSHLPEPDWYRLGALIVTLFRSFAVVDVEIWQADNGDWIADALVAFGDRRRLRRGEGDTPLHAVIELITDIQRY
Ga0308411_100031954F014738GAGGMKLDILLLVSAFALAFVHPDAAQVAASAVLLLLTVRIERGRRARKKKSAPASG
Ga0308411_100031955F007404AGGAGMDIVEIFQLLAAGHTGLTAIDYLWNALFGAIGAATAYLADNEGEVILPRYDAEQHSVELGALGRVLVGAGAGVLVGYSGYIPFVAGVVAPTLLPILIDKITAFVGRGRK
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