NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318567_10367586

Scaffold Ga0318567_10367586


Overview

Basic Information
Taxon OID3300031821 Open in IMG/M
Scaffold IDGa0318567_10367586 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044852Metagenome153Y
F067066Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0318567_103675861F044852GGAGMKLKLVAGISALLISALAYAQQSGPRPKKPTKADVQNVVQIVTSDKVKTQVYCDLTKLEDRLKAVQQNTD
Ga0318567_103675863F067066N/AHVAYASHFDMDVAFCARMRAAIAAGLESAPIGVITTPGTKNPKYVPTEHWSPSCSSGNMD

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