NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10002413

Scaffold Ga0307478_10002413


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10002413 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14716
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044616Metagenome154Y
F047848Metagenome / Metatranscriptome149Y
F097887Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000241317F097887AGGAGGMKIFDNSRKQIGRLDVSMSNDTTVTVHELRNITTITVRDRNTGKVTTETLIGQSPFGTSE
Ga0307478_1000241318F044616AGGAGMRSPSPEKIECPLCCGTGELSRAEILDRLGAKDVARVAQLSAEEAFRLLQNRYDREHQSAWSRFETELAKRVAEIREQHKGELYLALSEKENLCRRVEDSLREMAELRERNQLLEGELAKVARVGKREEMDFAEEARTWAGICISEKLPRNGDFILSHRAPNGDPVEPRILIDNKDKATIAESDIDKLLRDARERSIGIAALVARDENQLRLADRESRWSRKDGVWLLRTTRQWLPRDLDMLKPVFERMRVQGFDLLEKNAVLAEELCRTFPEIDRIEKELGKAAKAIQSVSALVLRYKDRLRELCETATATLDSKEERNDGGMSVVSRH
Ga0307478_1000241320F047848AGGAGGMDYVHVFVLRTLCVDENGEIKSRNVAVTFDMFEAEDHRNKGLENGYDTFVVPGD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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