NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1009532

Scaffold Ga0308409_1009532


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1009532 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3154
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F081390Metagenome / Metatranscriptome114Y
F093914Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10095322F081390N/AMCSDYLLVPPLRAQRREVLRDALERQTVKRVGRAVIDVPAQH
Ga0308409_10095323F004791AGGAGGMDKPVEIYDIETIRVDRSALSIRDAASVLNNELTAPVVARLVRKAIGNQADRFPLRSLKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHQFLDASERKIAFPEVAKTLLIKAYGEDILNEPYAAAALLLRKIFDAVGDEGNE
Ga0308409_10095324F093914N/AELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAP
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