NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310917_10440524

Scaffold Ga0310917_10440524


Overview

Basic Information
Taxon OID3300031833 Open in IMG/M
Scaffold IDGa0310917_10440524 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007009Metagenome / Metatranscriptome360Y
F060554Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0310917_104405241F007009GGAGMQARTAFRLAMLKNGFQPLLNDCKRPIEKGWPKQIVDAAEVLSWDRSALASTGLKIDGDLAVVDVDVADASLVETLADALGTSFPVLFERGLVRHAGGPKEAWIVRVEEPFRRLASRRWYRGNDPDDPAAAKHLVECFGSLGTRQFGIDGPHARSETGEIVDSYQFAGGASPATTPRAALPVLPKAAFVEACNLFDYIAAAAGLNTIKEVRNSRGETALRVFELEADTEVETQDHGAMTVAELERHMRARRNGTTT
Ga0310917_104405242F060554N/AHVTVHVCIATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
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