NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1015269

Scaffold Ga0308404_1015269


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1015269 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F092120Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10152691F092120N/AYGFKDALPDFVAGLCSFFGVASPVLNFVRLPVTLMVVGFVFWTAWRVFRSLS
Ga0308404_10152692F000855AGGAGMDWLEDFFSKVVSWLDERTANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSVPALRFIVDWLGGMVDYTRLMYMLVDYVAYASIVQQALAAQLTIVAVGLGFRAWLVIRRVVLVS
Ga0308404_10152693F001381GAGMQYVIATLYVLLWLALAAAAALVLPLWALPASLVQLAVAYVMLRAWLTAAAGGDDGA
Ga0308404_10152694F000642AGGAGMQEISIALAICAIGAAIWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVLRVDRTLIWIARCDAAALIDHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308404_10152695F002978GAGMSVRDWRVTIVPWADRRLWFVQARRGRRVIWGVVYDADDPDSVALARRAIATLRAAGADCSALPHPLPGAPGAPGAPGA
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