NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1038983

Scaffold Ga0308404_1038983


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1038983 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)988
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006183Metagenome / Metatranscriptome379Y
F056637Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10389831F006183AGGLKVPATVGVPEMVMLPPEKVPVTPAGKSANVAPVAPVVLYVIGMIAVFTQTVWLSVPGAEVRVMVLFGCTMMVPVAVTFPQPPVKV
Ga0308404_10389832F006183AGGLKVPATVGVPEMVMLPPEKVPVMPAGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVSVMVLLGRTMMVPMAVTFPQPPVRVTV
Ga0308404_10389833F056637GGTGGVIGVIGVSTQTVWLSVPGAEVSVMVLLVLLSCTMMVPVAVTFPQPAVKVTV
Ga0308404_10389834F056637N/APENVAPVAPVVLYLIGVIAVFTQTVWLSVPGAEVSVMVLLGRTMMVPVAVTFPQPPVRVT
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Institute for Fundamental Biomedical Research
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