NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306923_10095561

Scaffold Ga0306923_10095561


Overview

Basic Information
Taxon OID3300031910 Open in IMG/M
Scaffold IDGa0306923_10095561 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3348
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002177Metagenome / Metatranscriptome587Y
F086013Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0306923_100955614F002177GGAMQTEELATQLPTHGRPLKFTPERLEQIRNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLRRVVFDNGTGLLRRGGPHSNTRTSKYSPSRGGDVPLPPINEQPQQNSQSGPAELKNEVDSANLALVMQYRGDERTTELPLTQDMIWQLAFEAQFRNMSIGELIGEVTTVIMKKDLFQLVLPPSSKHQKMLACAK
Ga0306923_100955615F086013N/AMMATMMQIDQNLSAALYMLGFKLLGGDLLSGEMAEIKGDMTIK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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