NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308174_10001038

Scaffold Ga0308174_10001038


Overview

Basic Information
Taxon OID3300031939 Open in IMG/M
Scaffold IDGa0308174_10001038 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12438
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049136Metagenome / Metatranscriptome147Y
F087648Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308174_100010383F087648AGGMRCVECGRLKALDERGWVTVMSPSGQLRIRYCPECVADLVFRASTADAVDDYSDDA
Ga0308174_100010386F049136GAGGMGSVSETGSTPEDGRGRGRRVRAWGGYAWFMSFGTFLPLPVFVAGYLAQLTFVGAPLARRAYSLGIFLSTLGQRPPGADRLESHGKEQSEKEKKPFAERIRAHAPPGWVERRETPYAVAARASWFVLVGWWLGGLWTLLAWSVLLLPYPFPELIRKLLADLPSVLTLAPAEA
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