NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10083951

Scaffold Ga0315904_10083951


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10083951 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3400
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F023324Metagenome / Metatranscriptome210Y
F023330Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100839515F002301GGAMQEYLTEYDSVVSALAAEYHRKYSMVEKADIAQTLWVWFITHPNKYKEWSKLEQKDRDKLIAKSLRNAAITYCEKEKAKTIGYELLDLYYYDSSVVEVFLPSIIGESYEIPAKIKDLNFKFSKGESSNDGNNWLALRSDIANAFYKLSEAKQNVLRAKYGAENVEWVQLGQELKTSPDAARMKVQRAINSLIKHLGGFRPFYDSDDEQGERIEHEDE
Ga0315904_100839516F023330GAGMSKPKDIRDLMHHGDYSKAMDLRGTPIGTMCICGCEVFLALVAFGEDKEIAFYFLDGECVNCGSLITLPTPVDME
Ga0315904_100839519F023324N/AAAAIALYLAGETDFKVLGTAALAGFLGPVLKWLDPSAPEFGRKK
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