NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306926_11005727

Scaffold Ga0306926_11005727


Overview

Basic Information
Taxon OID3300031954 Open in IMG/M
Scaffold IDGa0306926_11005727 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000385Metagenome / Metatranscriptome1206Y
F044343Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0306926_110057271F044343N/AVSKNFTQTIVADFEYEVSDGNLPKPLCMVAHVLDEN
Ga0306926_110057272F000385AGGAGGMADEQTNPRLKVVGDEIDEAAISVPKPKKFSLNKFKSTSEPTLANVETLLTGLPHYPISQAKDFVRLHPNEKEYWSVELCFVNVPIKGQKHDTLHLIDEVVAERNLPSARILRFRLALASKPNDIFFLCHVPSRNLDNSWNETNLQACEQAKTLWTQATSLKEAGFEKYKVDKSRDPDAFPEPNWPKQSLEELIGATFEGCQIETEDHPGLLRLIGKKPPLS
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