NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10117041

Scaffold Ga0307479_10117041


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10117041 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2597
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006617Metagenome / Metatranscriptome368N
F010240Metagenome / Metatranscriptome306Y
F091691Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0307479_101170411F091691AGGMKDSDKVLQDMEEGADGMTKYGNMMLEFIKKEIFQERKNISVEEVVTLVAALTDLSVSLLAKFRKEP
Ga0307479_101170412F010240GGALRSNPFAYRYELNYQAFSASILSGLRILPLQRQFVTSFREQLGIYVLASMSNIFLTASQFLAVSTAVTSYLPVDPGTSELIASYGHGPGIVLALILGSLVFQGVLLVVVLILALSAVSRTRWRWAYPFLGLVVSGFVGYWLGAKFLGTLEWVSTLQNSRIDSSGPYSGLFWFGLAASICYLLMILILRKSYGQLVETHMSRNDLSTQE
Ga0307479_101170414F006617GGALIFYRVTPALVVMRGEGRDEAANMVGAKPMLLWYVWIRLVDGAWHRLDEISKQLRLPNNAIEWAAKFLCDKGMAERGFEENEIRLSRGNARFEDAVRALSSSAKSSK
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