Scaffold Ga0318575_10018164

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0318575_10018164

Scaffold Ga0318575_10018164

Overview

Basic Information
Taxon OID	3300032055 Open in IMG/M
Scaffold ID	Ga0318575_10018164 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2894
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028208	Metagenome / Metatranscriptome	192	Y
F060554	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318575_100181641	F060554	N/A	YRPGQTRHVTVHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLGQI
Ga0318575_100181642	F028208	N/A	MQARTAFRLSALKNGFQPLLTDCKRPIEKGWPKRIVDEAEVLSWDRSALLSTGMKIDGDLAVIDADVADASLVETLADALSKNFPTLFEHGLVRHAGGPKEAWIARVDEPFRRLASRRWYRGSDPDDPEVPKHMVECFGSLGTRQFAVNGPHARNQAGEVIDEYRFAGGASPATTPRASLPVLPKAAYAAACDLFDTIAAAAGLTAIKESRNSRGEATPRVFELDADTEIETRDYGVLTVAELERFMRARRAGANALVTLRCSGTFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSARFEFLSQLQARNPFDDRRV

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