NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1028296

Scaffold Ga0308421_1028296


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1028296 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1762
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F092120Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10282961F002978GAGMSVRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAIATLRSAGADCSALPAVLPGSPGAPGA
Ga0308421_10282962F000642GGAGMQEIGIALALCAVAAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLAASYGDAGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308421_10282963F001381GAGMHYVIATLYVLLWLALAAAAALVLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308421_10282964F000855AGGAGMDWLEDFWSKVVGWWDHASANVYNGIVAFVNSLVEIWNGWMDALLHPAQAMPSIPALRFIVGWLGGIVDYTRLMYMLVDYIAYASVVQQALIAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308421_10282965F092120N/AICDLPAPVLADAPEYGFRDAFPDFILGLCGFLGVASPVLNFVRLPVTLMVVGFVFWTAWKVFRSLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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