NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10000154

Scaffold Ga0315315_10000154


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10000154 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51769
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (28.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023615Metagenome / Metatranscriptome209Y
F039679Metagenome163Y
F041775Metagenome / Metatranscriptome159Y
F073417Metagenome120Y
F092065Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315315_10000154116F023615N/AMNRFELEDAMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWNVFEQLIKNGTIANKDK
Ga0315315_10000154124F039679N/AMSVDEKLASMNSHLTIRDDLVEEGMSVPVWFLDYKEDVHIEQTSTLNIDCEYWTDGEELNAWGANIIIRITDPTQMDKYGFPWKDRLAFAISADFDWN
Ga0315315_1000015426F073417N/AMIKNNKVEQIRQELNLDLDLGLALAEAEGNLNHLARESNSADWQGTITQGITILDALNAVQKARKAFQQIKQNKSK
Ga0315315_1000015444F041775N/AMYLNDPNHLQVQDVDSLEANELVMAFIHDNMIEPMTDKNMLDNNQLSMLNVVGSALKCIAQKAHAYETLTESQDSSIYRN
Ga0315315_1000015481F092065N/AMQEIINKIYERMEFCANAHTLCQEEEQAYISELSCLNEILDQIEGFPWDHLQTTKAN
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