NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1001122

Scaffold Ga0308414_1001122


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1001122 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17438
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005631Metagenome / Metatranscriptome394N
F012577Metagenome / Metatranscriptome279Y
F081390Metagenome / Metatranscriptome114Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308414_100112210F002970GGAGMSYNTVIDILKLLSDLAVQYNNAVVPVWYLSTQANWSDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVAQLRFAWYVRGDVQLLNVSGIVDVIRYGERAYEGVVMTTRFAHLIRAPSP
Ga0308414_100112213F081390N/AMRCDQRLMPPLCAQRCEMLRDALKRQTVKRVGRAVVDIPAQH
Ga0308414_100112216F012577AGGAGMLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPVYARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMDDVTRWQPVGAGFMSSSGYDSRGDLWEYEIIEVGGFQNIRIRTKRDFVISNTTLFFLAYLYDQPERYAPISTTEQISVFFVSMTGLATGVWVAPVIAIPTPDAYTLTLGTFTGLSANGGITATFCFGWIIGVQASGNETTAGDTSVTFRATINTPIINTTLLNPALTLNGGCCDIRLPSIYHTKITKPDANVRDIIEQSLTASVRYHHKRFLRDRPLPIIDFRTDSTLTWRFPEIVRTVDISKAPNRIYGQYRGYWTDHLTAMTTIQSLETRRQLASRIASVGEYGSKALAEERRNEAAVALDRQIAPLAVELDNTRYELMLRSGETVPNWAADVSDYAIVPGYFRNAKIASRIITRERTTYTVSFNPDDFVTALR
Ga0308414_10011225F005631GGAGMRVSVSVDLDNALHKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQVRVHRGRWASVRDAAEAAKKEAIAVLKGR
Ga0308414_10011228F105262AGGAGGMLVQETIQPLLRYFNANVTAPADTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKAIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTDWTRVL
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