NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316226_1143404

Scaffold Ga0316226_1143404


Overview

Basic Information
Taxon OID3300032562 Open in IMG/M
Scaffold IDGa0316226_1143404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1055
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048060Metagenome / Metatranscriptome148Y
F054519Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0316226_11434041F054519GGAMDADLISLRDEIDARLVEVEHSRGTCTGHPALARAIATLLRCQRAQLNQRAASAVAAAKVGGIVGAVLIGVIEAAKHLLSK
Ga0316226_11434043F048060AGGMWLALFTAVLDWLTGLVKSQTQTAGEDVQAKPGLKERLNKRLAEWKASKGAP

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