NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000126

Scaffold Ga0335085_10000126


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000126 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)244261
Total Scaffold Genes237 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)202 (85.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031402Metagenome / Metatranscriptome182Y
F039315Metagenome / Metatranscriptome164Y
F068015Metagenome / Metatranscriptome125Y
F076358Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000126211F068015GGAGGMAKGNGLRGAAIRVGSAVGKVDAKAHKAVKAAHVELVAITKQVDALKRQLTQSTQRLKTALK
Ga0335085_1000012639F076358GGAGMSFLHFSHPRKVLCLFYSSAFLSALIFGAASYASVSYQRPLLVLALVTALAAAFFLVLFLRSRDERERQINYRALTFAFVGTFVFSLVVGLAQRLGFHSLSWLGIPVLMITLWSGGLILNSWRDQ
Ga0335085_1000012658F031402AGGAMKLADISPGSDVAYLSAAKIIAEQVEFELETCRRLLGTEPDKVLELLANTPDWSVFLDDEHL
Ga0335085_1000012699F039315GGAMTSLDKMSLAELEDLAAKLRHAIARNPGHSRMEQVELEDVKQWIAIRQNRDSESEA
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