NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000015

Scaffold Ga0335079_10000015


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000015 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)231642
Total Scaffold Genes225 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)169 (75.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000171Metagenome / Metatranscriptome1783Y
F004560Metagenome / Metatranscriptome433Y
F053426Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_10000015108F053426N/AVATSDPSREPMLDRAMPADAVPGSTIPEDTEAEIQLHDGSWVWAQVIGQRRDRHGRWCIGLRWYASPSVGGREGWYRLDRRFIRRPKGHLLPQMRHPAGCTSPC
Ga0335079_10000015221F004560AGGGGGVSEVDRLEAAVGECREMIREAHAATKDLRAAVRDAKRELHDLARDEVTARIEAEVTRQLTELGERTSAAVTAATQKVITEFDRFGESLLGKETYWQRASGRRAVPRPDTDVIELDVPSEDGSG
Ga0335079_1000001537F000171GGAGMLAIIVLVLIAVVALTVLSFAVHVLFSPWLLLAAIGILAWVKFRPRRSRR
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