NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10015733

Scaffold Ga0335070_10015733


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10015733 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8795
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F020884Metagenome221Y
F062951Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1001573313F020884GGAGGMQIRNNWGELIGEINTAYTGAGEVITTNTMYDRGNPVFQTINVRGNQGQVRTTNVIRGKILP
Ga0335070_1001573314F006757AGGMRSVAVLPPVKNELHAVLLNIAAFKNYTTEDLIAMARALPGGTKVHIPDRLTAIALLLGTRAAGD
Ga0335070_1001573315F062951AGAAGGMQIGEPLRTIIVEPLELPVEQPTGEPEPTPVPEAEPEEAPTAQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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