Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000043 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	174786
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (67.61%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

174786

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (67.61%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F004318	Metagenome / Metatranscriptome	443	Y
F005943	Metagenome	385	Y
F006298	Metagenome	376	Y
F021494	Metagenome	218	Y
F039539	Metagenome	163	Y
F041034	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000004316	F006298	N/A	MERRLVIKNSNSLYTIYLTILSKVLVRRVVLNFHIYKELFSLINLTLKIFYAFILNQEALEVGYSNFTISNVSYTLTKLIICLLLLIKGVSS
Ga0307507_1000004317	F002220	AGG	VHLLKSNSVIKLSFSFGFAIRFTFTNLSFLRAENWLSPKIIILLVYMLMIPNRVPIVIIRKHGLNIEVVIKSFSL
Ga0307507_1000004324	F004318	AGTAG	MFKVLSKLRLSLVSYIVSYLGLGLVLVTELVLDLGLGSLSILFIVEY
Ga0307507_1000004325	F005943	AGG	MLRNAGNSYKAYVFGESTRRYAIDRKGRGRKEVIYPRVADISCTRGVRKSTGFSYRGPCGRVP
Ga0307507_1000004328	F041034	N/A	VDVGKILRLVELSGLLRYRVDIGRNFRLVDSSEFFRF
Ga0307507_1000004345	F039539	AGGA	VDLLEDNTPVKLNKLLTLDFKKFIKLKKGLTNKELYKLLPKRYHNFIDMCL
Ga0307507_100000435	F000630	GAG	MGVKGIEAVLGKRNLGRSIVNAIGGKYLRAPRRPNKGRKYNSNTPKNRNNRTKRLALLSRCPGR
Ga0307507_100000436	F021494	N/A	LHPNYYLFYIELSIPVFYVPISASISKSVIISSSSPNLTGWLYALYRLAANVIFAALSLILNCPGFELAIAVYRGLPIGHPLPCVPCDPYIPI
Ga0307507_1000004369	F002220	AGG	MHLLKSNSVIKLSFSFSFAIRFAFTSLSSLRAKNWSSPKIIILLVYMPTILNRVPVVVIRKHRLNIEVVIKSFSLWYLL
Ga0307507_100000439	F000630	N/A	MGVEGTKAILGKRNPSRSMVNATGGKYLRALRRPNKGRKYNGNTFKNRNNRTKRLALLGRRPSM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000043

Overview

Ecosystem & Geography

Associated Families

Sequences