NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000050

Scaffold Ga0307507_10000050


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000050 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)169847
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (58.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F004318Metagenome / Metatranscriptome443Y
F005943Metagenome385Y
F014479Metagenome / Metatranscriptome262Y
F015182Metagenome256Y
F017572Metagenome240Y
F054477Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000005046F017572N/AMLEPAYGNVKPPVYKADMYRGQKEDKWQVLKIISYEDVDNKI
Ga0307507_1000005049F004318N/AVLSEIKLFLVFYIVSYLGLGLVLGTELVLNLGLGSLSILFIVKY
Ga0307507_1000005064F015182GGCGGVTKAISDFFKEIFLVFSVVLGKNSSIFLEFNIELIK
Ga0307507_1000005066F005943AGGMLRNAGKGYKAYIFGESTRRCAIDRKGRGRKEVIYPRVADISCTRGVRESTGFSYGGPCGRVP
Ga0307507_1000005071F014479N/AVGLEGFQLLSSSIATIIESIYVFLSVASNYRYARVFKLLVHLGIRAYLAILPRGLYYHNLLPSEGPSCLSAIAFYKVFMEFLLGSSRDFKGGR
Ga0307507_1000005072F000247N/AVQTNTINITLSYKRTPRTEVAYTNYLTSSLNTFTDKTPVPSSSIPFTYLSADKKLYYSGSLSSNKSIDPTSTGL
Ga0307507_1000005077F054477N/AVSISLGVKARANKLNSPVINWRCRLSIGIKLFFGFNIVASKEYYLTIIGSLKV
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