Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000065 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	160945
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (52.38%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

160945

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (52.38%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F004318	Metagenome / Metatranscriptome	443	Y
F006298	Metagenome	376	Y
F007022	Metagenome	359	Y
F008599	Metagenome	330	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000006514	F014479	N/A	VGLKGFWLLSSSVATVIEGICVFLSVAGNRRYARVFELLVYLGIRTRLAILPRGLYYCNLSLLEGPSCLSATAFYKVFIEFPFRSLRDFKGGQWI
Ga0307507_1000006515	F000247	AGG	LVQTNIINVALSYKRTLCTEVAHTNCLTGSLNIFADKTLVPSSSVLFAYLSANRKLYYSSGLSLNKSIDLTSTSL
Ga0307507_100000652	F007022	N/A	MIIYLNYKKDSYFALSCLELKDIGNIKEIQEETSNKLGKEES
Ga0307507_1000006520	F000630	GAG	MGVKGLEANLSKRNLNHSIVNAMGDKYPRALKRPNKGRKYNSNTLKDRNNRTKRLALLGRYPSR
Ga0307507_1000006524	F078226	N/A	VQDIDANKNTNNNNSKEELEDPNGYYLILFGTLTIDEVTSISVELANKAYAYLLTITSMEPTTETNPFNYNIITTALRYTSIVFIGIIINTSALKKSMAGYRQF
Ga0307507_1000006525	F006298	N/A	MERRLVIKNSDGLYAIYLTILSKVLVRRVVLNFHIYKELFSLITLTLKVFYAFILNQEALEVGYSDLTISNISYTLMELIIFLLLLIKGVSS
Ga0307507_1000006529	F008599	AGTAG	MGLPYRQKEYLYPLIIILGDLIAYRGGIINLKTGPI
Ga0307507_100000654	F004318	N/A	MSKVLSEFKLSLVSYIVSYIVLGSVLGIKLVLDLGLGSLSIFFIVEYQFF
Ga0307507_100000657	F009949	GGA	MGNAMGGKYPRAPRGPNKGRKYNGNTLKDRNNRAKRLASLGGCPSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000065

Overview

Ecosystem & Geography

Associated Families

Sequences