NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000114

Scaffold Ga0307507_10000114


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000114 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)133267
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (70.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F004318Metagenome / Metatranscriptome443Y
F009949Metagenome310Y
F050242Metagenome145Y
F061416Metagenome131Y
F064533Metagenome128Y
F084969Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000011440F004318N/AMLSKLKLSLVSYIVSYLALGLVLGIELILDLGLGSLSILFIVKY
Ga0307507_1000011441F064533N/AMGSPIRPLYPQIGIGLGGSLRGAFKKLASFIAYCVSIKAKVFALELAKVEVKT
Ga0307507_1000011442F050242GGAMRLYVPTSTAKDVGHFSIGSREVVRINFKLVLQLKLLIIKYRVSSVYKQ
Ga0307507_1000011443F084969GAGMPLKALVITLSTAVITLGTSGDTSIGDISSQLVTVG
Ga0307507_1000011445F002555AGTAGMLGIFKDEDKEEGDSVTDSLSTMLQLLGEELEEAS
Ga0307507_1000011448F061416AGGMYFKVMQKGAKLVTPTDQVAYVGLFLLGRALEWFKPYFIEIQANGVMTTNPDIWYVFAS
Ga0307507_1000011451F009949AGGAMVNAIGDKYLRAPKRPNKGRKYNSNTLKNRNNRTKRLALLGRYSNR
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Institute for Fundamental Biomedical Research
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