NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000198

Scaffold Ga0307507_10000198


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000198 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112539
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F003725Metagenome471Y
F004318Metagenome / Metatranscriptome443Y
F032105Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000019810F032105GGAMTAKAPRLKPVRIIDILKGNVLSLTIMADKILLKTIKVTISNCLIYIPEVVKLFFKPLLPPLAEPY
Ga0307507_1000019814F003725N/AMETLIDLYTDLTEIAKLVQQRIKRYYNTKRSKGPDLKEGDKV
Ga0307507_100001984F002220AGGMHLLKSNSIVKLSFSFGFAIRFAFTSLSSLRAKNWSSPKIIVLLVYMPTIPNGVPVVVIKKHRLNIEVVIKSFSLWCLL
Ga0307507_100001987F004318N/AVLSGLGLSLVSYVVLGLVLGMELVLDLGLGSLNILFIVEYQFF
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